Projects
List of example projects that have used the HSNPipeline.
Table of Contents
Place Cell Methods
The place cell methods uses simulations, human data, and rodent data to examine properties of place cell detection methods. An overview of the place cell methods project is available in the project repository.
Associated repositories:
- SimPlaceCells
- A repository for simulating place cells.
- AnalyzeTrain
- A repository for analyzing Train data.
- AnalyzeRatHC3
- A repository for analyzing rat data from the HC3 dataset.
The reference for this project is:
Zhang W., Donoghue T., Qasim S.E., Jacobs J. (preprint). Evaluating Place Cell Detection Methods in
Rats and Humans – Implications for Cross-Species Spatial Coding. bioRxiv. DOI: 10.1101/2025.08.29.672705
Direct Link: https://doi.org/10.1101/2025.08.29.672705
Treasure Hunt
Treasure Hunt (TH) is a spatial navigation and memory task. A recent project using the TH task with human single-neuron recordings uses the pipeline and has publicly available data & code.
Associated repositories:
- ConvertTH
- A repository for converting TH data to NWB format.
- AnalyzeTH
- A repository for analyzing TH data.
The reference for this project is:
Donoghue, T., Cao, R., Han, C. Z., Holman, C. M., Brandmeir, N. J., Wang, S., & Jacobs, J. (2023). Single
neurons in the human medial temporal lobe flexibly shift representations across spatial and memory tasks.
Hippocampus, 33(5), 600–615. DOI: 10.1002/hipo.23539
Direct Link: https://doi.org/10.1002/hipo.23539